% #__________ (1961). The visual effects of non-redundant stimulation. *Nature*, *192*, 739-740.

% #Andrews, D. P., MacKay, D. M., & Wilson, J. P. (1963). Apparent relative movement of 'unsharp' and 'sharp' visual patterns (reply to F. J. Verheijen). *Nature*, *199*, 161.

% #Anstis, S. M., Gregory, R. L., & De M. Rudolf, N, & MacKay, D. M. (1963). Influence of stroboscopic illumination on the after-effect of seen movement. *Nature*, *199*, 99-100.
@book{RussellNorvik,
author={Russell, S. and Norvik, P.},
year={1995},
title={Artificial Intelligence: A Modern Approach},
publisher={Prentice Hall},
address={Englewood Cliffs, NJ}
}
@article{KabaSaad99,
author={Kabashima, Y. and Saad, D.},
title={Statistical Mechanics of Error-correcting Codes},
year={1999},
journal={Europhys. Lett.},
volume={45},
pages={97-103}
}
@article{KabaMuraSaad00a,
author={Kabashima, Y. and Murayama, T. and Saad, D.},
title={Typical Performance of {G}allager-Type Error-Correcting Codes},
year={2000},
journal={Physical Review Letters},
volume={84},number={6},
pages={1355-1358}
}
@article{KabaMuraSaad00b,
author={Kabashima, Y. and Murayama, T. and Saad, D.},
title={Cryptographical Properties of Ising Spin Systems},
year={2000},
journal={Physical Review Letters},
volume={84},number={9},
pages={2030-2033}
}
@unpublished{Naka00,
author={Nakamura, K. and Kabashima, Y. and Saad, D.},
year={2000},
title={Statistical Mechanics of Low-Density Parity Check Error-Correcting Codes over {G}alois fields},
note={Submitted to Europhysics Letters}
}
@unpublished{IBMpc,
author={Evangelos Eleftheriou},
note={IBM Z\"urich Research Laboratories},
year={2000},
title={Personal communication}
}
@phdthesis{Minka2001,
title={A family of algorithms for approximate Bayesian inference},
author={Thomas Minka},
type={PhD},
annote={PhD thesis},
year=2001,
school={MIT}
}
@article{Immink90,
author={K. A. S. Immink},
title={Runlength-Limited Sequences},
journal={Proc. IEEE}, volume={78}, pages={1745},
month={Nov},
year={1990}
}
@article{Immink97a,
author={K. A. S. Immink},
title={A Practical Method for Approaching the Channel Capacity of
Constrained Channels},
journal = {IEEE Trans. on Info. Theory},
volume={43},
pages={1389-1399}, number={5}, month={Sept}, year={1997}
}
@article{Immink98,
author={K. A. S. Immink and Paul Siegel and Jack Wolf},
title={Codes for Digital Recorders},
journal = {IEEE Trans. on Info. Theory},
volume={44}, pages={2260-2299},
month={Oct}, year={1998}
}
@article{Immink97b,
author={K. A. S. Immink},
title={Weakly constrained codes},
journal={Electronics Letters},
volume={33},
number={23},page={1943-1944}, month={Nov.}, year={1997}
}
@article{Immink95,
author={K. A. S. Immink},
title={Constructions of Almost Block-Decodable Runlength-Limited Codes},
journal={IEEE Trans. on Info. Theory},
Volume={ 41}, Number= 1,month={January}, year={ 1995}
}
@article{DengHerro,
author={R. H. Deng and M. A. Herro},
title={{DC}-free coset codes},
journal={IEEE Trans. Inf. Th.}, volume={34},
year={1988},
pages={786-792}
}
@article{Makarian,
author={G. S. Markarian and Naderi, M. and Honary, B. and Popplewell, A. and O'Reilly, J. J.},
title={Maximum likelihood decoding of {RLL-FEC} array codes on partial response channels},
journal={Electronics Letters},
year={1993},
volume={29}, number={16}, pages={1406-1408}
}
@article{Zigangirov1969,
author={Zigangirov, K. Sh.},
title={Sequential Decoding for a Binary Channel with Drop-outs and Insertions},
journal={Problemy Peredachi Informatsii},
volume={5},
number={2},
pages={23-30},
year={1969}
}
@article{Dobrushin1967,
author={Dobrushin, R. L.},
year={1967},
title={Shannon's theorem for Channels with Synchronization Errors},
journal={Problemy Peredachi Informatsii},
volume={3},
number={4},
pages={18-36},
annote={ref 1 in Zigangirov1969}
}
@unpublished{Pinsker1965,
author={M. S. Pinsker},
title={Capacity of Channels with Synchronization Errors},
note={Report at the Second Conference on the Theory of Coding and its Applications,
Baku},
year={1965},
annote={ref 2 in Zigangirov1969}
}
@article{Dobrushin1968,
author={Vvedenskaya, N. D., and Dobrushin, R. L.},
year={1968},
title={The Computations on a Computer of the Channel Capacity of a Line with Symbol Drop-out},
journal={Problemy Peredachi Informatsii},
volume={4},
number={3},
pages={92-95},
annote={ref 3 in Zigangirov1969}
}
@Book{Wozencraft1965,
author = {Wozencraft, J. M. and Jacobs, I. M.},
year=1965,
title = {Principles of Communication Engineering},
publisher = {Wiley},
address = {New York},
annote={ref 4 in Zigangirov1969; [Univ. Lib.] 431.c.96.413
South Front, Floor 6}
}
@article{Zigangirov1966,
author={Zigangirov, K. Sh.},
title={Some Sequential Decoding Procedures},
journal={Problemy Peredachi Informatsii},
volume={2},
number={4},
pages={13-25},
year={1966},
annote={ref 5 in Zigangirov1969}
}
@Book{Gallager68,
author = "Gallager, R. G.",
title = "Information Theory and Reliable Communication",
publisher = "Wiley",
year = 1968,
address = "New York"
}
% South Front 6
% [Univ. Lib.] 431.c.96.694
@Article{Gallager68b,
author = "Gallager, R. G.",
title = "Sequential Decoding for Binary Channels with Noise and Synchronization Errors",
note={unpublished Lincoln Lab report 25 G-2},
year={1961},
annote = "ref 6 in ZIGANGIROV1969.
The paper you mention was actually 1961 and was a group report
for MIT Lincoln Laboratories. You could probably get it from
the US Air Force, but I am asking my secretary to simply make
a copy of my copy and send it to you. It is a has few handwritten
comments on it by someone who read it (name lost in time), I
don't know how it ought to be referred to, probably just as
an unpublished Lincoln Lab report."
}
@Book{Wozencraft1965,
author = {Wozencraft, J. M. and Reiffen, B.},
year=1963,
title = {Sequential Decoding},
note={Russian translation -- need to find English reference},
annote={ref 7 in Zigangirov1969}
}
@article{Zigangirov1968,
author={Zigangirov, K. Sh.},
title={Sequential Decoding Procedures with Error Probability Exponent Given by Random Coding},
journal={Problemy Peredachi Informatsii},
volume={4},
number={2},
pages={83-85},
year={1968},
annote={ref 8 in Zigangirov1969}
}
% moved to http://lids.mit.edu/~sychung
% http://lids.mit.edu/~sychung/gaopt.html
% http://lids.mit.edu/~sychung/gath.html
@unpublished{ChungAppletb,
year={1999},
author={Chung, Sae-Young and Urbanke, R\"udiger L. and Richardson, Thomas J.},
title={{LDPC} code design applet},
note={{\tt http://lids.mit.edu/\verb+~+sychung/gath.html}},
annote={This one finds the threshold only}
}
@unpublished{ChungApplet,
year={1999},
author={Chung, Sae-Young and Urbanke, R\"udiger L. and Richardson, Thomas J.},
title={{LDPC} code design applet},
note={{\tt http://lids.mit.edu/\verb+~+sychung/gaopt.html}},
annote={This one optimizes}
}
@misc{UrbankeApplet,
title={{LdpcOpt} -- a fast and accurate degree distribution optimizer for {LDPC} code ensembles},
author={R. Urbanke},
url={http://lthcwww.epfl.ch/research/ldpcopt/},
year={2001},
note={{\tt{http://lthcwww.epfl.ch/research/ldpcopt/}}}
}
% forney
@ARTICLE{Turin97a,
author = {Turin, L.},
title = {Sensational subjects},
journal = {Chem. Ind.},
year = {1997},
volume = {},
pages = {924-+},
abstract = {}
}
@ARTICLE{Turin97b,
author = {Turin, L.},
title = {The nose as spectroscopist},
journal = {Chem. Ind.},
year = {1997},
volume = {},
pages = {866-870},
abstract = {}
}
@ARTICLE{Turin96,
author = {Turin, L.},
title = {A spectroscopic mechanism for primary olfactory
reception},
journal = {Chem. Senses},
year = {1996},
volume = {21},
pages = {773-791},
abstract = {}
}
% (John Edensor), 1885-1977
@book{Littlewood1986,
Author={ Littlewood, J. E.},
annote={ Originally published as: 'A mathematician's miscellany',
1953;
UL: 348:6.c.95.124 South Front, Floor 4;
page 186-188 is of interest to me},
Title={ Littlewood's miscellany},
editor={B\'ela Bollob\'as},
address={ Cambridge},
publisher={ Cambridge University Press},
year={1986}
}
@incollection{Littlewood1952,
title={ On the problem of $n$ bodies},
Author={ Littlewood, J. E.},
booktitle={Communications du s\'eminaire math\'ematique de l'Universit\'e
de Lund, tome supplementaire, d\'edi\'e \`a Marcel Riesz },
year={1952},
pages={143-151}
}
@book{Bentley2,
author={Jon Bentley},
edition={second},
title={Programming Pearls},
publisher={Addison-Wesley},
address={Reading, Massachusetts},
year={2000},
}
@misc{ dietterich91error-correcting,
author = "T. Dietterich and G. Bakiri",
title = "Error-correcting output codes: A general method for improving multiclass
inductive learning programs",
note={In Proceedings
of the Ninth National Conference on Artificial Intelligence (AAAI-91), pages
572--577. AAAI Press, 1991.},
text = "T. G. Dietterich and G. Bakiri. Error-correcting output codes: A general
method for improving multiclass inductive learning programs. In Proceedings
of the Ninth National Conference on Artificial Intelligence (AAAI-91), pages
572--577. AAAI Press, 1991.",
year = "1991"
}
@misc{ dietterich95solving,
author = "T. Dietterich and G. Bakiri",
title = "Solving multiclass learning problems via error-correcting output codes",
text = "Thomas G. Dietterich and Ghulum Bakiri. Solving multiclass learning problems
via error-correcting output codes. Journal of Artificial Intelligence Research,
2:263--286, January 1995.",
year = "1995"
}
@book{zurek,
title={Complexity, Entropy and the Physics of Information},
editor={Wojciech H. Zurek},
series={SFI Studies in the Sciences of Complexity},
year={1990},
publisher={Addison Wesley Longman},
annote={0-201-51506-7 www.santafe.edu/sfi/publications/Bookinforev/cepinew.html}
}
@article{besag77some,
author = "J. Besag",
title = "Some methods of statistical analysis for spatial data",
journal = "Bull.\ Intern.\ Statist.\ Inst.",
volume = "47(2)",
pages = "77-92",
year = "1977"
}
@techreport{YFW2000,
author={J. S. Yedidia and W. T. Freeman and Y. Weiss},
title={Generalized Belief Propagation},
institution={Mitsubishi Electric Research Laboratories},
note={TR-2000-26},
year={2000}
}
% posets:
@techreport{YFW2002,
author={J. S. Yedidia and W. T. Freeman and Y. Weiss},
title={Constructing Free Energy Approximations and Generalized Belief Propagation
Algorithms},
institution={Mitsubishi Electric Research Laboratories},
note={TR-2002-35},
year={2002},
annote={
The paper describes a new graphical notation ("region graphs") for
expressing propagation algorithms, which generalizes junction trees. This is contrast
to factor graphs, which are good at expressing a distribution, but not propagation
algorithms. Because they include both exact and approximate inference, I (TM) think region
graphs are currently the best method for expressing propagation algorithms.
}
}
@techreport{YFW2001short,
author={J. S. Yedidia and W. T. Freeman and Y. Weiss},
title={Characterization of belief propagation and its
generalizations},
institution={Mitsubishi Electric Research Laboratories},
note={TR-2001-15},
year={2000}
}
@techreport{YFW2001long,
author={J. S. Yedidia and W. T. Freeman and Y. Weiss},
title={{B}ethe
Free Energy, {K}ikuchi Approximations and Belief Propagation Algorithms},
institution={Mitsubishi Electric Research Laboratories},
note={TR-2001-16},
year={2000}
}
@techreport{Yedidia2000,
author={J. S. Yedidia},
title={An Idiosyncratic Journey Beyond Mean Field Theory},
institution={Mitsubishi Electric Research Laboratories},
note={TR-2000-27},
year={2000}
}
@techreport{SmolaBartlett,
author={A. Smola and P. Bartlett},
title={Sparse Greedy Gaussian Process Regression},
institution={Australian National University},
year={2000},
note={NIPS 13}
}
% was Welling2001,
@INPROCEEDINGS{Welling143.UAI-2001,
AUTHOR = "Welling, Max and Teh, Yee Whye",
TITLE = "Belief Optimization for Binary Networks: A Stable Alternative to Loopy Belief Propagation",
BOOKTITLE = "Uncertainty in Artificial Intelligence: Proceedings of the Seventeenth Conference (UAI-2001)",
PUBLISHER = "Morgan Kaufmann",
ADDRESS = "San Francisco, CA",
YEAR = "2001",
PAGES = "554-561"
}
@proceedings{DBLP:conf/uai/2001,
editor = {Jack S. Breese and
Daphne Koller},
title = {UAI '01: Proceedings of the 17th Conference in Uncertainty in
Artificial Intelligence, University of Washington, Seattle, Washington,
USA, August 2-5, 2001},
booktitle = {UAI},
publisher = {Morgan Kaufmann},
year = {2001},
isbn = {1-55860-800-1},
bibsource = {DBLP, http://dblp.uni-trier.de}
}
@inproceedings{Yuille2001,
author = "A. L. Yuille",
title = "A Double-Loop Algorithm to Minimize the {B}ethe and {K}ikuchi Free
Energies",
year = 2001,
editor={M. Figueiredo and J. Zerubia and A.K. Jain},
booktitle={Energy Minimization Methods in Computer Vision and Pattern Recognition.
Proceedings Third International Workshop, Sophia Antipolis France, September 3-5, 2001},
publisher={Springer},
annote={EMMCVPR 2001},
series={LNCS},
number = {2134},
pages={3-18}
}
@article{ fisher43relation,
author = "R. Fisher and A. Corbet and C. Williams",
title = "The relation between the number of species and the number of individuals
in a random sample of an animal population",
annote = "Fisher, R.A., Corbet, A.S., and Williams, C.B. 1943. The relation between
the number of species and the number of individuals in a random sample of
an animal population. Journal of Animal Ecology 12, 42-58.",
journal={ Journal of Animal Ecology},
volume={12},
pages={42-58},
year = "1943"
}
@Book{Schneier96,
author = {B. Schneier},
title = {Applied Cryptography},
publisher = {Wiley},
year = 1996,
address = {New York}
}
@book{Layzer84,
author={David Layzer},
title={Constructing the Universe},
publisher={Scientific American Library},
year={1984}
}
@book{Gingerich92,
title={ The Great Copernicus Chase : And Other Adventures in Astronomical History},
author={ Owen Gingerich },
publisher={Cambridge University Press },
year={ 1992}
}
@book{Gingerich93,
author={ Owen Gingerich },
title={The Eye of Heaven : Ptolemy, Copernicus, Kepler (Masters of Modern Physics)},
publisher={ American Institute of Physics },
year={ 1993}
}
% author={C. J. Colbourn and J. H. Dinitz (editors)},
@book{Designs,
editor={C. J. Colbourn and J. H. Dinitz},
title={The {CRC} Handbook of Combinatorial Designs},
publisher={CRC Press},
address={New York},
year=1996
}
@inproceedings{RosenthalVontobel,
author={Joachim Rosenthal and Pascal O. Vontobel},
title={Constructions of {LDPC} codes using {R}amanujan graphs and ideas from {M}argulis},
URL={See http://www.nd.edu/~rosen/preprints.html},
conference={38th Annual Allerton Conference on Communication, Control, and Computing, 2000},
booktitle={Proceedings of the 38th Annual Allerton Conference on Communication, Control, and Computing},
pages={248-257},
year=2000
}
% girth properties of gallager
@InProceedings{mao01,
author = {Yongyi Mao and Amir Banihashemi},
title = {A Heuristic Search for Good {LDPC} Codes at Short Block Lengths},
booktitle = {IEEE International Conference on Communications},
OPTpages = {},
year = {2001},
OPTeditor = {},
month = {June},
}
@InProceedings{mao00,
author = {Yongyi Mao and Amir Banihashemi},
title = {Design of Good {LDPC} Codes Using Girth Distribution},
booktitle={IEEE International Symposium on Info. Theory, Italy, June, 2000},
conference={IEEE International Symposium on Info. Theory, Italy, June, 2000},
year = {2000},
OPTeditor = {},
month = {June},
}
%Dr. Amir H. Banihashemi
% Y. Mao and A. H. Banihashemi, "Design of Good LDPC Codes Using Girth Distribution", presented (by A. Banihashemi. People knowing me will realize that those slides are not my style) at IEEE International Symposium on Info. Theory, Italy, June, 2000
@book{babel,
author="Jorge Luis Borges",
title="The {L}ibrary of {B}abel",
publisher="David R. Godine, Inc.",
address={Boston, Massachusetts},
year="1941", ISBN={ 156792123X},
translator={Andrew Hurley}
}
% ,illustrator={Erik Desmazieres}
% Borges wrote ?La Biblioteca de Babel? in 1941, and it was published the same year in a collection of stories entitled ?El jard?n de senderos que bifurcan? (?The Garden of Forking Paths?).
@misc{dasher164,
title={Dasher version 1.6.4},
author={David J. Ward},
note={Dasher version 1.6.4, available from
\verb+www.inference.phy.cam.ac.uk/dasher/+, (2001)},
annoteyear={2001}
}
@phdthesis{teahan97modelling,
author = "W. Teahan",
title = "Modelling {E}nglish {T}ext",
type={PhD},
school="Univ. of Waikato, N.Z.",
year = "1997" }
% Valiant's "PAC learning"
% http://yoda.cis.temple.edu:8080/UGAIWWW/lectures95/learn/pac/pac.html
% Valiant, L .G.: A Theory of the Learnable, CACM, 27(11):1134-1142,1984
@Article{valiant1984,
author = "L. G. Valiant",
title = "A theory of the Learnable",
journal = "Communications of the ACM",
year = "1984",
volume=27,
number=11,
pages = "1134-1142"
}
% PPMD5 reference modified for nature idiots
@inproceedings{Teahan95a,
AUTHOR ="Teahan, W. J.",
TITLE ="Probability estimation for {PPM}",
booktitle={Proceedings {NZCSRSC}'95},
note={Available from {\tt{http://citeseer.nj.nec.com/teahan95probability.html}}},
annote={Available from \verb+http://www.cs.waikato.ac.nz/~wjt/+%
\verb+papers/NZCSRSC.ps.gz+},
year="1995",
}
% Theres a copy of the paper in /home/djw30/papers/NZCSRSC.ps
%
@misc{teahan95probability,
author = "W. J. Teahan",
title = "Probability estimation for {PPM}",
note = "Probability estimation for {PPM}. In {\em Proc. of the N.Z. Comp.
Sci. Research Students' Conf.,} available from
\verb+citeseer.nj.nec.com/teahan95probability.html+ (1995).",
annote="Univ. of Waikato, Hamilton, New Zealand.",
year = "1995",
url = "citeseer.nj.nec.com/teahan95probability.html" }
@inproceedings{moffat95,
author = "A. Moffat and R. M. Neal and I. H. Witten",
title = "Arithmetic Coding Revisited",
booktitle="Proceedings of the Data Compression Conference 1995",
publisher="IEEE Computer Society Press",
editor="J. A. Storer and M. Cohn",
address="Los Alamitos: CA",
pages = "202-111",
year = "1995"
}
@article{ moffat90,
author = "A. Moffat",
title = "Implementing the {PPM} Data Compression Scheme",
journal = "IEEE Trans. on Communications",
volume = "38",
year = "1990",
pages={1917-1921}
}
@inproceedings{zoubincarlBMC,
author={C. E. Rasmussen and Z. Ghahramani},
title={{B}ayesian {M}onte {C}arlo},
year=2003,
booktitle={Advances in Neural Information Processing Systems XV},
conference={NIPS 2002},
editor={Suzanna Becker and Sebastian Thrun and Klaus Obermayer}
}
@INPROCEEDINGS{Chu01a,
author = {Chu, Wei and Keerthi, S. Sathiya and Ong, Chong Jin},
title = {A unified loss function in {B}ayesian
framework for support vector regression},
booktitle = {Proceedings of the 18th International Conference on Machine Learning},
year = {2001},
pages = {51-58},
url = {http://guppy.mpe.nus.edu.sg/\verb+~+mpessk/svm/icml.pdf}
}
@INPROCEEDINGS{Chu02b,
author = {Chu, Wei and Keerthi, S. S. and Ong, C. J.},
title = {A new {B}ayesian design method for support
vector classification},
booktitle = {Special Section on Support Vector Machines of the
9th International Conference on Neural Information Processing},
year = {2002},
url = {http://guppy.mpe.nus.edu.sg/\verb+~+chuwei/paper/btsvc_iconip.pdf},
}
@ARTICLE{Chu02c,
author = {Chu, Wei and Keerthi, S. Sathiya and Ong, Chong
Jin},
title = {{B}ayesian trigonometric support vector
classifier},
journal = {Neural Computation},
year = {2003},
pages = {},
url = {http://guppy.mpe.nus.edu.sg/\verb+~+mpessk/btsvc/btsvc.ps.gz},
}
@ARTICLE{Chu02d,
author = {Chu, Wei and Keerthi, S. Sathiya and Ong, Chong
Jin},
title = {{B}ayesian support vector regression using a unified loss function},
journal = {IEEE Trans. on Neural Networks},
year = {2003},
note={Submitted},
pages = {},
url = {http://guppy.mpe.nus.edu.sg/\verb+~+mpessk/papers/bisvr.pdf},
}
% the above are references for "doing support vectors in a Bayesian way"
% good stuff Sat 5/10/02
%approximate gaussian technique
@Unpublished{brink02,
author = {ten Brink, Stephan and Gerhard Kramer and Alexei Ashikhmin},
title = {Design of Low-Density Parity-Check Codes for
Multi-Antenna Modulation and Detection},
note = {Submitted to {\em IEEE Trans.\ on Communications}},
month = {June},
year = {2002},
}
%not looked at yet -- original EXIT chart paper?
@Article{brink99,
author = {ten Brink, Stephan},
title = {Convergence of Iterative Decoding},
journal = {Electronics Letters},
year = {1999},
volume = {35},
number = {10},
pages = {806-808},
month = {May},
}
% decoding by tanh and look at all dual codewords
% The expression as a sum over dual codewords is a special case of a very
%general group-theoretic result that is derived in the final section of my
%GSR paper, which I hope you have. It results from an application of the
%Poisson summation formula. Other references are Hartmann and Rudolph, IT,
%Sept. 1976; Battail et al., IT, May 1979; Hagenauer et al., IT, March
%1996; Riedel, JSAC, Feb 1998.
% "in [2] We point out that it is merely based on the Poisson summation formula. "
@article{hartmann1976,
author={C. R. P. Hartmann and L. D. Rudolph},
title="An optimum symbol by symbol decoding rule for linear codes",
journal = {IEEE Trans. on Info. Theory},
volume={IT-22}, pages={514-517},
month={Sept.},
year={1976},
annote={C. R. P. Hartmann and L. D. Rudolph, "An optimum symbol by symbol decoding rule for linear codes," IEEE Trans. Inform. Theory, Vol. IT-22, pp. 514-517, Sept. 1976.}
}
@book{Terras99,
title={Fourier Analysis on Finite Groups and Applications},
publisher={Cambridge University Press},
address={Cambridge, U.K.},
year={1999},
author={Terras, Audrey},
annote={http://math.ucsd.edu/~aterras/
http://books.cambridge.org/0521457181.htm
}
}
@inproceedings{Offer2001,
title={{LDPC} codes: a group algebra formulation},
author={E. Offer and E. Soljanin},
booktitle={Proc. Internat. Workshop on Coding and Cryptography WCC 2001, 8-12 Jan. 2001, Paris},
year=2001}
% * An algebraic description of iterative decoding schemes (E. Offer and E. Soljanin)
%Codes, Systems and Graphical Models, Volumes in Mathematics and its Applications, Springer Verlag New York, Eds. B. Marcus, J. Rosenthal, Dec. 2000.
@InCollection{Offer2000,
AUTHOR ="E. Offer and E. Soljanin",
title={ An algebraic description of iterative decoding schemes },
booktitle = {Codes, Systems and Graphical Models},
volume={123},
series = {IMA Volumes in Mathematics and its Applications},
publisher = {Springer},
year = 2000,
editor = {B. Marcus and J. Rosenthal},
address = {New York},
pages={283-298}
}
% {forneyGSR,
% author={G.D. Forney, Jr.},
% title={Codes on Graphs: Generalized State Realizations},
%note={preprint, 1999}
%} % this ended up being published as
%% G. D. Forney, Jr., "Codes on graphs: Normal realizations," IEEE Trans.
%% Inform. Theory, vol. 47, pp. 520-548, Feb. 2001.
@article{goodhillsimmenwillshaw94,
annote={Goodhill, G J, Simmen, M W & Willshaw, D J (1994). An evaluation of the use of multidimensional scaling for understanding brain connectivity. Phil Trans Roy Soc B, 348, 265-280.},
author={Goodhill, G. J. and Simmen, M. W. and Willshaw, D. J.},
year={1994},
title={An evaluation of the use of multidimensional scaling for understanding brain connectivity},
journal={Phil. Trans. Roy. Soc. B},
volume={348},
pages={265-280}
}
@article{NCRG/96/015,
title = {GTM: The Generative Topographic Mapping},
journal = {Neural Computation},
volume = {10},
number = {1},
year = {1998},
pages = {215--235},
author = {Christopher M. Bishop and Markus Svens\'{e}n and Christopher K. I. Williams},
abstract = {Latent variable models represent the probability density
of data in a space of several dimensions in terms of a smaller
number of latent, or hidden, variables. A familiar example is
factor analysis which is based on a linear transformations between
the latent space and the data space. In this paper we introduce a
form of non-linear latent variable model called the Generative
Topographic Mapping, for which the parameters of the model can be
determined using the EM algorithm. GTM provides a principled
alternative to the widely used Self-Organizing Map (SOM) of
Kohonen (1982), and overcomes most of the significant limitations
of the SOM. We demonstrate the performance of the GTM algorithm on
a toy problem and on simulated data from flow diagnostics for a
multi-phase oil pipeline.},
trnumber = {NCRG/96/015}
}
% Digital fountain codes
% see also bibs/luby.bbl
@article{byers2002,
URL={ http://www.digitalfountain.com/technology/researchLibrary/index.cfm },
title={A Digital Fountain Approach to Asynchronous Reliable Multicast
},
Author={John W. Byers and Michael Luby and Michael Mitzenmacher
},
Abstract={The proliferation of applications that must reliably distribute large, rich content to a vast number of autonomous receivers motivates the design of new multicast and broadcast protocols. We describe an ideal, fully scalable protocol for these applications that we call a digital fountain. A digital fountain allows any number of heterogeneous receivers to acquire content with optimal efficiency at times of their choosing. Moreover, no feedback channels are needed to ensure reliable delivery, even in the face of high loss rates.
We develop a protocol that closely approximates a digital fountain using two new classes of erasure codes that for large block sizes are orders of magnitude faster than standard erasure codes. We provide performance measurements that demonstrate the feasibility of our approach and discuss the design, implementation, and performance of an experimental system.
},
annote={IEEE Journal on Selected Areas in Communications, vol. 20, no. 8, pp. 1528-1540, October 2002.}
}
@inproceedings{luby2002,
year={2002},
title={{LT} Codes},
Author={Michael Luby},
Abstract={We introduce LT codes, the first rateless erasure codes that are very efficient as the data length grows.},
URL={ http://www.digitalfountain.com/technology/researchLibrary/index.cfm },
booktitle={ Proceedings of The 43rd Annual IEEE Symposium on Foundations of Computer Science,
November 16--19 2002},
pages={271-282}
}
@TechReport{wainwright2003old,
author={M. J. Wainwright and T. Jaakkola and A. S. Willsky},
title={Tree-based reparameterization framework for analysis of sum-product and related algorithms},
institution={Laboratory for Information and Decision Systems, MIT},
number={P-2510},
address={},
year={2002},
url={http://www.cs.berkeley.edu/~martinw/},
annote={M. J. Wainwright, T. Jaakkola and A. S. Willsky. Tree-based reparameterization framework for analysis of sum-product and related algorithms. LIDS Technical Report P-2510; Laboratory for Information and Decision Systems, MIT; IEEE Transactions on Information Theory, 45(9): pages 1120--1146. }
}
@article{wainwright2003,
author={M. J. Wainwright and T. Jaakkola and A. S. Willsky},
title={Tree-based reparameterization framework for analysis of sum-product and related algorithms},
year={2003},
journal={IEEE Transactions on Information Theory},
volume=45,
number=9,
pages={1120-1146},
annote={M. J. Wainwright, T. Jaakkola and A. S. Willsky. Tree-based reparameterization framework for analysis of sum-product and related algorithms. LIDS Technical Report P-2510; Laboratory for Information and Decision Systems, MIT; IEEE Transactions on Information Theory, 45(9): pages 1120--1146. }
}
@Article{Scholtz82,
author = {Scholtz, R. A.},
title = {The Origins of Spread-Spectrum Communications},
journal = {IEEE Trans. on Communications},
year = 1982,
volume = 30,
number = 5,
pages = {822-854},
month = {May}
}
\hyphenation{Spring-er}
@inproceedings{Winn:StructuredVIBES2003,
author = "C. M. Bishop and J. M. Winn",
title = "Structured variational distributions in {VIBES}",
year = 2003,
booktitle = nips,
abstract = "Variational methods are becoming increasingly popular
for the approximate solution of complex probabilistic models in
machine learning, computer vision, information retrieval and many
other fields. Unfortunately, for every new application it is necessary
first to derive the specific forms of the variational update equations
for the particular probabilistic model being used, and then to implement
these equations in application-specific software. Each of these steps is
both time consuming and error prone. We have therefore recently developed
a general purpose inference engine called VIBES (`Variational Inference for
Bayesian Networks') which allows a wide variety of probabilistic models to
be implemented and solved variationally without recourse to coding. New
models are specified as a directed acyclic graph using an interface analogous
to a drawing package, and VIBES then automatically generates and solves the
variational equations. The original version of VIBES assumed a fully factorized
variational posterior distribution. In this paper we present an extension of
VIBES in which the variational posterior distribution corresponds to a
sub-graph of the full probabilistic model. Such structured distributions can
produce much closer approximations to the true posterior distribution. We
illustrate this approach using an example based on Bayesian hidden Markov models."
}
@inproceedings{Winn:VIBES2002,
author = "C. M. Bishop and J. M. Winn and D. Spiegelhalter",
title = "{VIBES}: A variational inference engine for {B}ayesian networks",
year = 2002,
booktitle={Advances in Neural Information Processing Systems XV},
editor={Suzanna Becker and Sebastian Thrun and Klaus Obermayer},
abstract = "In recent years several techniques have been proposed for modelling
the low-dimensional manifolds, or `subspaces', of natural images. Examples
include principal component analysis (as used for instance in `eigen-faces'),
independent component analysis, and auto-encoder neural networks. Such
methods suffer from a number of restrictions such as the limitation to
linear manifolds or the absence of a probabilistic representation. In this
paper we exploit recent developments in the fields of variational inference
and latent variable models to develop a novel and tractable probabilistic
approach to modelling manifolds which can handle complex non-linearities.
Our framework comprises a mixture of sub-space components in which both the
number of components and the effective dimensionality of the sub-spaces are
determined automatically as part of the Bayesian inference procedure. We
illustrate our approach using two classical problems: modelling the manifold
of face images and modelling the manifolds of hand-written digits."
}
@inproceedings{Winn:ImageModelling2000,
author = "C. M. Bishop and J. M. Winn",
title = "Non-linear {B}ayesian image modelling",
year = 2000,
booktitle = "Proceedings Sixth European Conference on Computer Vision",
volume = 1,
pages = "3-17",
publisher = {Springer},
abstract = "In recent years variational methods have become a popular tool
for approximate inference and learning in a wide variety of probabilistic models.
For each new application, however, it is currently necessary first to derive
the variational update equations, and then to implement them in
application-specific code. Each of these steps is both time consuming and
error prone. In this paper we describe a general purpose inference engine
called VIBES (`Variational Inference for Bayesian Networks') which allows a
wide variety of probabilistic models to be implemented and solved variationally
without recourse to coding. New models are specified either through a simple
script or via a graphical interface analogous to a drawing package. VIBES then
automatically generates and solves the variational equations. We illustrate
the power and flexibility of VIBES using examples from Bayesian mixture
modelling."
}
@misc{grassl2003,
year={2003},
author={Grassl, Markus},
title={Table of Quantum Error-Correcting Codes},
url={http://avalon.ira.uka.de/home/grassl/QECC/},
note={{\tt{http://avalon.ira.uka.de/home/grassl/QECC/}}}
}
% donated by CKIW ........
@phdthesis{adams-01,
author = "Adams, N. J.",
title = {{Dynamic Trees: A Hierarchical Probabilistic Approach
to Image Modelling}},
type={PhD},
year = "2001",
school = {Division of Informatics, University of Edinburgh, UK}
}
unpublished{adams-storkey-ghahramani-williams-99,
author = {Adams, N. J. and Storkey, A. and Ghahramani, Z. and
Williams, C. K. I.},
title = {{MFDTs: Mean Field Dynamic Trees}},
year = {1999},
note = {Submitted to ICPR 2000}
}
@inproceedings{adams-storkey-ghahramani-williams-00,
author = {Adams, N. J. and Storkey, A. and Ghahramani, Z. and
Williams, C. K. I.},
title = {{MFDTs: Mean Field Dynamic Trees}},
booktitle = {Proceedings of 15th International Conference on Pattern Recognition},
year = {2000}
}
@inproceedings{adams-williams-99,
author = {Adams, N. J. and Williams, C. K. I.},
title = {{SDTs: Sparse Dynamic Trees}},
booktitle = {Proc. ICANN'99},
year = {1999},
note = {To appear},
publisher = {IEE}
}
@misc{adams-williams-01a,
author = {Adams, N. J. and Williams, C. K. I.},
title = {{Dynamic Trees for Image Modelling}},
year = {2001},
note = {Submitted to \emph{Image and Vision Computing}.}
}
@misc{adams-williams-01b,
author = {Adams, N. J. and Williams, C. K. I.},
title = {{Dynamic Trees: Learning to Model Outdoor Scenes}},
year = {2001},
note = {Submitted to \emph{European Conference on Computer Vision ECCV 2002}}
}
@inproceedings{adams-williams-02,
author = {Adams, N. J. and Williams, C. K. I.},
title = {{Dynamic Trees: Learning to Model Outdoor Scenes}},
booktitle = {{Proceedings of the Seventh European Conferrence
on Computer Vision, ECCV 2002}},
publisher = {Springer},
editor = {Heyden, A. and Sparr, G. and Nielsen, M. and Johansen, P.},
pages = {IV 82-96},
note = {Lecture Notes in Computer Science 2353},
year = {2002}
}
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author = {Aizerman, M. A. and Braverman, E. M. and Rozoner, L. I.},
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year = {1991},
volume = {67},
pages = {51-79}
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Hybrid Monte Carlo}},
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editor = {Mozer, M. C. and Jordan, M. I. and Petsche, T.},
publisher = {MIT Press},
year = {1997},
}
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author = {Barlow, H.},
title = {{Unsupervised Learning}},
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@incollection{baumberg-hogg-94,
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title = {An efficient method for contour tracking using active shape models},
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@inproceedings{beis-lowe-93,
author = {Beis, J. S. and Lowe, D. G.},
title = {{Learning Indexing Functions for 3-D Model-Based Object
Recognition}},
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Learning in Computer Vision},
year = {1993},
pages = {50-54},
note = {Proceedings available as AAAI Tech Report FSS-93-04}
}
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title = {{Recognition polynomials}},
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year = {1993},
volume = {10(4)},
pages = {759-764}
}
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author = {Berg, C. and Christensen, J. P. R. and Ressel, P.},
title = {{Harmonic Analysis on Semigroups}},
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}
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author = {Bernardo, J. M. and Smith, A. F. M.},
title = {{Bayesian Theory}},
year = {1994},
publisher = {Wiley},
address = {Chichester, UK}
}
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author = "J. Besag",
title = "On the statistical analysis of dirty pirtures",
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year = "1974",
volume = "48(3)",
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}
@techreport{beymer-shashua-poggio-93,
author = {Beymer, D. and Shashua, A. and Poggio, T.},
title = {{Example Based Image Analysis and Synthesis}},
institution = {AI Laboratory, MIT},
year = {1993},
number = {{1431}},
type = {AI Memo}
}
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author = {Biehl, M. and Schwarze, H.},
title = {{Learning by Online Gradient Descent}},
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pages = {643}
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author = {Binford, T. O.},
title = {{Visual perception by computer}},
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note = {Miami}
}
@techreport{bishop-94,
author = {Bishop, C. M.},
title = {{Mixture Density Networks}},
institution = {Neural Computing Research Group, Aston University, UK},
year = {1994},
number = {{NCRG/4288}},
type = {Technical Report}
}
@book{bishop-95,
author = {C. M. Bishop},
title = {{Neural Networks for Pattern Recognition}},
year = {1995},
publisher = {Clarendon Press},
address = {Oxford}
}
@article{bishop-novelty-94,
author = {Bishop, C. M.},
title = {Novelty Detection and Neural Network Validation},
journal = {IEE Proceedings: Vision, Image and Signal Processing},
year = 1994,
volume = 141,
number = 4,
pages = {217--222}
}
@unpublished{bishop-svensen-williams-97,
author = {Bishop, C. M. and Svensen, M. and Williams, C. K. I.},
title = {{GTM: The Generative Topographic Mapping}},
year = {1997},
note = {Accepted for publication in \emph{Neural Computation}.}
}
@inproceedings{bishop-svensen-williams-97b,
author = {Bishop, C. M. and Svensen, M. and Williams, C. K. I.},
title = {{Magnification Factors for the GTM Algorithm}},
booktitle = {Proc. 5th IEE Conference on Artificial Neural Networks},
year = {1997}
}
@article{bishop-svensen-williams-98,
author = {Bishop, C. M. and Svensen, M. and Williams, C. K. I.},
title = {{GTM: The Generative Topographic Mapping}},
journal = {Neural Computation},
year = {1998},
volume = {10(1)},
pages = {215-234}
}
@article{bishop-svensen-williams-98b,
author = {Bishop, C. M. and Svensen, M. and Williams, C. K. I.},
title = {{Developments of the Generative Topographic Mapping}},
journal = {Neurocomputing},
year = {1998},
volume = {21},
pages = {203-224}
}
@inproceedings{bishop-hinton-strachan-97,
author = {Bishop, C. M. and Hinton, G. E. and Strachan, I. G. D.},
title = {{GTM Through Time}},
booktitle = {Proc. 5th IEE Conference on Artificial Neural Networks},
year = {1997}
}
@inproceedings{black-jepson-96,
author = {Black, M. J. and Jepson, A.},
title = {{EigenTracking: Robust matching and tracking of
articulated objects using a view-based representation}},
booktitle = {Proceedings of the Fourth European Conference on Computer
Vision, ECCV'96},
editor = {B. Buxton and R. Cipolla},
publisher = {Springer},
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pages = {329-342},
year = {1996}
}
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title = {{Active Contours}},
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@misc{blake-merz-98,
author = "Blake, C. L. and Merz, C. J.",
year = "1998",
title = "{UCI} Repository of machine learning databases",
note = "http://www.ics.uci.edu/\verb+~+mlearn/MLRepository.html",
institution = "University of California, Irvine, Dept. of Information and Computer Sciences"
}
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pages = {57-82}
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year = {1994},
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pages = {162-177}
}
@phdthesis{brown-87,
author = "Brown, P. F.",
title = "The Acoustic-Modeling Problem in
Automatic Speech Recognition",
year = "1987",
type={PhD},
school = {Computer Science Department, CMU}
}
@book{castillo-gutierrez-hadi-97,
author = {Castillo, E. and Guti\'{e}rrez, J. M. and Hadi, A. S.},
title = {{Expert Systems and Probabilistic Network Models}},
year = {1997},
publisher = {Springer},
address = {New York}
}
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author = {Castro, P. E. and Lawton, W. H. and Sylvestre, E. A.},
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year = {1986},
volume = {28(4)},
pages = {329-337}
}
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author = {Charniak, E.},
title = {{Statistical Language Learning}},
year = {1993},
publisher = {MIT Press},
address = {Cambridge, Massachusetts}
}
@book{chatfield-89,
author = {Chatfield, C.},
title = {{The Analysis of Time Series: An Introduction}},
year = {1989},
publisher = {Chapman and Hall},
edition = {4th},
address = {London}
}
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author = {Chatfield, C.},
title = {{Model Uncertainty, Data Mining and Statistical-inference}},
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@inproceedings{cheng-bouman-98,
author = {Cheng, H. and Bouman, C. A.},
title = {{Trainable Context Model for Multiscale Segmentation}},
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pages = {610-614}
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key = {image-processing},
author = {Gonzalez, R. C. and Wintz, P.},
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address = {Reading, Massachusetts},
edition = {second}
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author = {Lowe, D. G.},
title = {{Perceptual Organization and Visual Recognition}},
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title = {Mixture models: inference and applications to clustering},
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}
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author = {McLachlan, G.~J. and Krishnan, T.},
title = {{THe EM Algorithm}},
year = {1997},
publisher = {Wiley},
address = {Chichester, UK}
}
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key = {Rissanen},
author = {Rissanen, J.},
title = {Stochastic Complexity in Statistical Inquiry},
year = {1989},
publisher = {World Scientific Publ. Co.}
}
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title = {A Neural Network Sensor Model with Input Noise},
year = {1999},
note = {Submitted to Neurocomputing Letters}
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author = {Cortes, C. and Vapnik, V.},
title = {{Support Vector networks}},
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year = {1995},
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author = {Cowles, M. K. and Carlin, B. P.},
title = {{Markov-Chain Monte-Carlo Convergence Diagnostics---A
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pages = {883-904}
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author = {Cox, T. F. and Cox, M. A. A.},
title = {{Multidimensional Scaling}},
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address = {London}
}
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author = {Cressie, N. A. C.},
title = {{Statistics for Spatial Data}},
year = {1993},
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address = {New York}
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@book{cristianini-shawe-taylor-00,
author = {Cristianini, N. and Shawe-Taylor, J.},
title = {{An Introduction to Support Vector Machines}},
year = {2000},
publisher = {Cambridge University Press}
}
@incollection{critchley-78,
author = {Critchley, F.},
title = {Multidimensionsal scaling: a short critique and a
new method},
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abstract={
In a Bayesian mixture model it is not necessary a priori to limit the number of components to be finite. In this paper an infinite Gaussian mixture model is presented which neatly sidesteps the difficult problem of finding the ``right'' number of mixture components. Inference in the model is done using an efficient parameter-free Markov Chain that relies entirely on Gibbs sampling.
},
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Adaptive Markov Chain Monte Carlo Through Regeneration
},
abstract={
Markov chain Monte Carlo (MCMC) is used for evaluating expectations of functions of interest under a target distribution p. This is done by calculating averages over the sample path of a Markov chain having p as its stationary distribution. For computational efficiency, the Markov chain should be rapidly mixing. This sometimes can be achieved only by careful design of the transition kernel of the chain, on the basis of a detailed preliminary exploratory analysis of p. An alternative approach might be to allow the transition kernel to adapt whenever new features of p are encountered during the MCMC run. However, if such adaptation occurs infinitely often, then the stationary distribution of the chain may be disturbed. We describe a framework, based on the concept of Markov chain regeneration, which allows adaptation to occur infinitely often but does not disturb the stationary distribution of the chain or the consistency of sample path averages.
},
journal={J.A.S.A.},
Volume=93, Number=443,
month={September},
year={1998},
pages={1045-1054}
}
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PAGES = {298-304}
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author = {Storkey, A. and Williams, C. K. I.},
title = {{Image Modelling with Position-Encoding Dynamic Trees}},
year = {2001},
note = {Submitted to \emph{IEEE Trans Pattern Analysis and
Machine Intelligence}, Nov 2001}
}
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@inproceedings{vivarelli-williams-99,
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@incollection{vdM-arbib-95,
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@misc{wahba-96,
author = {Wahba, G.},
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year = {1996},
note = {Slides presented at the NIPS workshop on Model Complexity, December 1996. Available from \verb+http://www.stat.wisc.edu/~wahba/wahba.html+.}
}
@incollection{wahba-99,
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\emph{IEEE Trans. Image Processing}}
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author = "Williams, C. K. I.",
title = "{Using Deterministic Boltzmann machines for discriminating temporally distorted strings}",
year = "1990",
school = "Dept. of Computer Science, University of Toronto"
)
@incollection (williams-hinton-91,
author = "Williams, C. K. I. and Hinton, G. E.",
title = "{Mean field networks that learn to discriminate temporally distorted strings}",
year = "1991",
publisher = "Morgan Kaufmann",
address="San Mateo, CA",
editor = "Touretzky, D. S. and Elman, J. L. and Sejnowski, T. J.",
booktitle = "{Connectionist Models: Proceedings of the 1990 Summer School}"
)
@phdthesis{williams-94,
author = {Williams, C. K. I.},
title = {{Combining deformable models and neural networks for
handprinted digit recognition}},
type={PhD},
year = {1994},
school = {Dept. of Computer Science, University of Toronto}
}
@incollection{williams-95,
author = {Williams, C. K. I.},
title = {{Regression with Gaussian Processes}},
year = {1997},
booktitle = {Mathematics of Neural Networks: Models, Algorithms and Applications},
publisher = {Kluwer},
editor = {Ellacott, S. W. and Mason, J. C. and Anderson, I. J.},
note = {Paper presented at the Mathematics of Neural Networks
and Applications Conference, Oxford, UK, June 1995.}
}
@unpublished{williams-cvbm-93,
author = {Williams, C. K. I. and others},
title = {{Continuous valued Boltzmann machines}},
year = {1993},
note = {Unpublished manuscript},
institution = {Department of Computer Science, University of Toronto}
}
@unpublished{williams-gen-stat-93,
author = {Williams, C. K. I. and others},
title = {{Generative statistical models for object recognition}},
year = {1993},
note = {Unpublished manuscript},
institution = {Department of Computer Science, University of Toronto}
}
@inproceedings{williams-97a,
author = {Williams, C. K. I.},
title = {{Computing with infinite networks}},
booktitle = {Advances in Neural Information Processing Systems 9},
editor = {Mozer, M. C. and Jordan, M. I. and Petsche, T.},
publisher = {MIT Press},
year = {1997},
}
@incollection{williams-98,
author = "Williams, C. K. I.",
title = "Prediction with {Gaussian} Processes: From Linear Regression
to Linear Prediction and beyond",
booktitle = "Learning in Graphical Models",
editor = "Jordan, M. I.",
publisher = "Kluwer",
year = "1998",
pages = "599-621"
}
% was williams-97b
@article{williams-98b,
author = {Williams, C. K. I.},
title = {{Computation with infinite neural networks}},
year = {1998},
journal = {Neural Computation},
volume = {10(5)},
pages = {1203-1216},
}
@incollection{williams-00,
author = {Williams, C. K. I.},
title = {{A {MCMC} approach to Hierarchical Mixture Modelling }},
booktitle = {Advances in Neural Information Processing Systems 12},
year = {2000},
editor = {Solla, S. A. and Leen, T. K. and M\"{u}ller, K-R.},
publisher = {MIT Press}
}
@incollection{williams-02,
author = {Williams, C. K. I.},
title = {Gaussian Processes},
booktitle = {{Handbook of Brain Theory and Neural Networks}},
year = {2002},
publisher = {MIT Press},
editor = {Arbib, M. A.}
}
@incollection{williams-adams-99,
author = {Williams, C. K. I. and Adams, N. J.},
title = {{DTs: Dynamic Trees}},
booktitle = {Advances in Neural Information Processing Systems 11},
year = {1999},
editor = {Kearns, M. J. and Solla, S. A. and Cohn, D. A.},
publisher = {MIT Press}
}
@incollection{williams-agakov-felderhof-01,
author = {Williams, C. K. I. and Agakov, F. V and Felderhof, S. N.},
title = {{Products of Gaussians}},
booktitle = {Advances in Neural Information Processing Systems 14},
year = {2002},
editor = {Dietterich, T. G. and Becker, S. and Ghahramani, Z.},
publisher = {MIT Press}
}
@misc{williams-barber-97,
author = {Williams, C. K. I. and Barber, D.},
title = {{Bayesian Classification with Gaussian Processes}},
year = {1997},
note = {Submitted to \emph{IEEE PAMI}}
}
@article{williams-barber-98,
author = {Williams, C. K. I. and Barber, D.},
title = {{Bayesian classification with Gaussian processes}},
year = {1998},
journal = {{IEEE Trans. on Pattern Analysis and Machine Intelligence}},
volume = {20(12)},
pages = {1342-1351}
}
@incollection{williams-felderhof-01,
author = {Williams, C. K. I. and Felderhof, S. N.},
title = {Products and Sums of Tree-Structured Gaussian Processes},
booktitle = {Proceedings of the Fourth International ICSC Symposium on
Soft Computing},
year = {2001},
publisher = {ICSC-NAISO Academic Press},
}
@inproceedings{williams-feng-98,
author = {Williams, C. K. I. and Feng, X.},
title = {{Combining Neural Networks and Belief Networks for Image
Segmentation}},
booktitle = {Neural Networks for Signal Processing VIII},
year = {1998},
editor = {Constantinides, T. and Kung, S-Y. and Niranjan, M. and
Wilson, E.},
publisher = {IEEE}
}
@inproceedings{williams-feng-99,
author = {Williams, C. K. I. and Feng, X.},
title = {{Tree-structured belief networks as models of images}},
booktitle = {Proc. ICANN'99},
year = {1999},
note = {To appear},
publisher = {IEE}
}
@inproceedings{williams-qazaz-bishop-zhu-95,
author = {Williams, C. K. I. and Qazaz, C. and Bishop, C. M. and
Zhu, H.},
title = {{On the relationship between Bayesian error bars and
the input data density}},
booktitle = {Fourth International Conference on Artificial Neural Networks},
year = {1995},
pages = {160-165},
note = {Held at Churchill College, Cambridge, UK, 26-28 June 1995},
publisher = {IEE Conference Publication No. 409}
}
@incollection{williams-rasmussen-96,
author = {Williams, C. K. I. and Rasmussen, C. E.},
title = {Gaussian processes for regression},
booktitle = {Advances in Neural Information Processing Systems 8},
year = {1996},
pages = {514-520},
editor = {Touretzky, D. S. and Mozer, M. C. and Hasselmo, M. E.},
publisher = {MIT Press},
}
@incollection{williams-revow-hinton-93,
key = {Williams},
author = {Williams, C. K. I. and Revow, M. D. and Hinton, G. E.},
title = {{Hand-printed digit recogntion using deformable models}},
booktitle = {Spatial Vision in Humans and Robots},
year = {1993},
editor = {L. Harris and M. Jenkin},
publisher = {Cambridge University Press}
}
@article{williams-revow-hinton-97,
author = {Williams, C. K. I. and Revow, M. and Hinton, G. E.},
title = {Instantiating deformable models with a neural net},
journal = {Computer Vision and Image Understanding},
year = {1997},
volume = {68},
number = {1},
pages = {120-126}
}
@inproceedings{williams-revow-hinton-95,
author = {Williams, C. K. I. and Revow, M. D. and Hinton, G. E.},
title = {Using a neural net to instantiate a deformable
model},
booktitle = {Advances in Neural Information Processing Systems,
Vol. 7},
year = {1995},
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}
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TITLE = {Reinforcement Learning: An Introduction},
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PUBLISHER = {MIT Press},
ADDRESS = {Cambridge, MA},
YEAR = 1998,
anNOTE = {A Bradford Book},
URL = {http://www-anw.cs.umass.edu/~rich/book/the-book.html}
}
% Kraft inequality
% L. G. Kraft. A Device for Quantizing Grouping and Coding Amplitude Modulated Pulses, MS Thesis, Electrical Eng. Dept., MIT, Cambridge, MA, 1949.
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@misc{GrahamKnowlton68,
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howpublished={U.S. Patent 3,369,177},
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%2 Diopters ....... the approximate amount of longitudinal chromatic aberration of the human eye over the visible spectrum The reference I like is Howarth and Bradley, Vision Research 26, 361-366, 1986 but probably a better one is Wald and Griffin 1947, JOSA, 37, 321-336
% Howarth, P.A. and Bradley, A. (1986) The longitudinal aberration of the human eye and its correction. Vision Res., 26, 361-366.
@article{ChromAb1986,
author={Howarth, P.A. and Bradley, A.},
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title={The longitudinal aberration of the human eye and its correction},
journal={Vision Res.},
volume={26},
pages={361-366}
}
% Wald, G. and Griffin, D.R. 1947. The change in refractive power of the eye in bright and dim light. J. Opt. Soc. Am. 37. 321-336
@article{ChromAb1947,
author={Wald, G. and Griffin, D.R.},
year={1947},
title={The change in refractive power of the eye in bright and dim light},
journal={J. Opt. Soc. Am.},
volume={37},
pages={321-336}
}
% # Howarth, P.A. and Bradley, A. (1986) The longitudinal chromatic aberration of the eye. Proceedings of the Northeastern State Symposium on theoretical and clinical optometry. pp124-137.
%Howarth, P.A., Zhang, X., Bradley, A.B., Still, D.L. and Thibos, L.N. (1988) Does the chromatic aberration of the eye vary with age? J. Opt. Soc. Amer. A 5, 2087-2092.
%
%Thibos, L.N., Bradley, A., Still, D.L., Zhang, X. and Howarth, P.A. (1990) Theory and measurement of ocular chromatic aberration. Vision Res. 30, 33-49.
%
%Bradley, A., Zhang, X. and Thibos, L.N. (1991). Achromatizing the human eye. Optom. Vis. Sci. 68, 608-616.
%
%http://www.opt.indiana.edu/people/faculty/bradley.htm
%
%# Thibos, L.N., Bradley, A. and Still, D. (1991). Interferometric measurement of visual acuity and the effect of ocular chromatic aberration. Appl. Opt. 30, 2079-2087.
%
%# Thibos, L.N., Bradley, A. and Zhang, X. (1991). The effect of ocular chromatic aberration on monocular visual performance. Optom. Vis. Sci. 68, 599-607.
%
%# Zhang, X., Bradley, A. and Thibos, L.N. (1991). Achromatizing the human eye: the problem of chromatic parallax. J. Opt. Soc. Am. A. 8,686-691.
%
%# Zhang, X., Thibos, L.N. and Bradley, A. (1991). A simple model to describe the relationship between the chromatic difference of focus and chromatic difference of magnification in human eyes. Optom. Vis. Sci. 68, 456-458.
%
%Ye, M., Bradley, A., Zhang, X., Thibos, L.N. (1992) The effect of pupil size on chromostereopsis and chromatic diplopia: Interaction between the Stiles-Crawford Effect and chromatic aberration. Vision Research , 32, 2121-28.
%
%# Thibos, L.N., Ye M, Zhang, X, and Bradley, A. (1992) The Chromatic Eye: A new reduced-eye model of Ocular Chromatic Aberration in humans, Applied Optics, 31, 3594-600.
%
%
%
%Winn, B., Bradley, A., Strang, N.C., McGraw, P.V. and Thibos, L.N. (1995). Reversals of the colour-depth illusion explained by ocular chromatic aberration. Vision Research, 35, 2675-2684.
%
@InProceedings{diggavi02,
author = {Suhas N. Diggavi and Matthias Grossglauer},
title = {Bounds on the Capacity of Deletion Channels},
booktitle = {IEEE International Symposium on Information Theory},
OPTcrossref = {},
OPTkey = {},
OPTpages = {},
year = {2002},
OPTeditor = {},
OPTannote = {http://icapeople.epfl.ch/grossglauser/Papers/allerton01.ps}
}
@article{QianHopfield96,
author={Qian, H. and Hopfield, J. J.},
year={1996},
title={Entropy-enthalpy compensation: {P}erturbation
and relaxation in thermodynamic systems},
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volume={105},
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annote={Qian, H. and Hopfield, J. 1996. Entropy-enthalpy compensation: Perturbation
and relaxation in thermodynamic systems. J. Phys. Chem. 105: 9292-9299}
}
@PHDTHESIS{Speelpenning1980a,
author = "Bert Speelpenning",
month = "January",
year = 1980,
title = "Compiling Fast Partial Derivatives of Functions Given by Algorithms",
address = "Urbana-Champaign, IL",
school = "Department of Computer Science, University of Illinois at
Urbana-Champaign",
key = "Speelpenning1980a",
abstract = "This is the author's doctoral thesis. It starts by comparing
previous work in the area of symbolic differentiation of
algorithms. Specifically it considers the work of Warner in 1975,
Joss in 1976 and Kedem in 1977. The conclusions reached in this
discussion are that the work by Joss is the best in terms of
improvement. The author proceeds to describe how Joss' work can
be improved in terms of speed, accuracy and space. A package,
Jake, is described which is a compiler that takes a Fortran 66
input definition of a function. This input is limited in that
only one subroutine can be specified, and that certain Fortran 66
statements are disallowed. Jake is instructed on how to perform
its task by directives within the subroutine. Timing results are
provided on the performance of the code produced by Jake over
those where finite differencing is used.",
keywords = "point algorithm; precompiler; numerical results."
}
@BOOK{Griewank2000a,
author = "Andreas Griewank",
year = 2000,
title = "Evaluating Derivatives: Principles and Techniques of Algorithmic
Differentiation",
series = "Frontiers in Appl. Math.",
number = 19,
publisher = "SIAM",
address = "Philadelphia, PA",
key = "Griewank2000a",
isbn = "0--89871--451--6"
}
@misc{hu-eleftheriou-arnold2003,
year={2003},
author = "Hu, Xiao--Yu and Eleftheriou, Evangelos and Arnold, Dieter-Michael",
annote = "Xiao--Yu Hu, Evangelos Eleftheriou, Dieter-Michael Arnold",
title = "Regular and Irregular Progressive Edge-Growth {T}anner Graphs",
note={Submitted to IEEE TRANS. on INFORMATION THEORY},
url = "citeseer.nj.nec.com/570728.html"
}
@article{BakerJoshE1999,
author = {Baker, Josh E. and LaConte, Leslie E. W. and Brust-Mascher, Ingrid and Thomas, David D.},
title = {{Mechanochemical Coupling in Spin-Labeled, Active, Isometric Muscle}},
journal = {Biophys. J.},
volume = {77},
number = {5},
pages = {2657-2664},
year = {1999},
abstract = {Observed effects of inorganic phosphate (Pi) on active isometric muscle may provide the answer to one of the fundamental questions in muscle biophysics: how are the free energies of the chemical species in the myosin-catalyzed ATP hydrolysis (ATPase) reaction coupled to muscle force? Pate and Cooke (1989. Pflugers Arch. 414:73-81) showed that active, isometric muscle force varies logarithmically with [Pi]. Here, by simultaneously measuring electron paramagnetic resonance and the force of spin-labeled muscle fibers, we show that, in active, isometric muscle, the fraction of myosin heads in any given biochemical state is independent of both [Pi] and force. These direct observations of mechanochemical coupling in muscle are immediately described by a muscle equation of state containing muscle force as a state variable. These results challenge the conventional assumption mechanochemical coupling is localized to individual myosin heads in muscle.
},
URL = {http://www.biophysj.org/cgi/content/abstract/77/5/2657},
eprint = {http://www.biophysj.org/cgi/reprint/77/5/2657.pdf}
}
@article{ ldpc_7,
author = "A. Shokrollahi",
journal = "Proceedings of AAECC-13, Lecture Notes in Computer Science 1719",
title = "New sequences of linear time erasure codes approaching the channel capacity",
}
@book{Ambegaokar1996,
title={Reasoning about Luck: Probability and its Uses in Physics},
author={Vinay Ambegaokar},
year={1996},
isbn={0521447372}
}
@book{Tversky1982,
title={Judgment under Uncertainty: Heuristics and Biases},
editor={Daniel Kahneman and Paul Slovic and Amos Tversky},
year={1982},
annote={544 pages},
ISBN={0521284147}
}
@inproceedings{Huber1998,
author={Mark Huber},
title={Exact Sampling and Approximate Counting Techniques},
booktitle={Proceedings of the 30th ACM Symposium on the Theory of Computing},
pages={31-40},
year={1998},
annote={Mark Huber. Exact Sampling and Approximate Counting Techniques. In Proceedings of the 30th ACM Symposium on the Theory of Computing, pages 31--40, 1998.}
}
@article{Mead1979,
author={D. G. Mead},
title={The average number of weighings to locate
a counterfeit coin},
journal={IEEE Transactions on Information Theory},
month={Sept},
year={1979}, vol= 25, number= 5,
pages={616-617}
}
@article{Berlekamp1976,
author={Elwyn R. Berlekamp},
title={Cooperative Bridge Bidding},
journal={IEEE Transactions on Information Theory},
month={Nov},
year={1976}, vol=22, number=6, pages={753-756}
}
@article{Cohn1976,
author={David L. Cohn},
title={An Enumeration Scheme for Bidding Sequences in Bridge},
journal={IEEE Transactions on Information Theory},
month={Nov},
year={1976}, vol=22, number=6, pages={756-757}
}
@article{haffenden,
author={Haffenden, L. J. W. and Yaylayan, V. A., and Fortin, J.},
annote={ (Food Chemistry 73, 67-72)
reported that **deuteration of Benzaldehyde changes its perceived smell**.
},
title={Investigation of vibrational theory of olfaction with variously labelled benzaldehydes},
journal={Food Chemistry},
volume={73},
number={1},
year={2001},
pages={67-72},
annote={L.J.W. Haffenden, V.A. Yaylayan, J. Fortin, Investigation of vibrational theory of olfaction with variously labelled benzaldehydes, Food Chemistry 73 (1) (2001) pp. 67-72. }
}
@article{Keller2004,
title={A psychophysical test of the vibration theory of olfaction},
author={Andreas Keller and Leslie B. Vosshall},
annote={ Laboratory of Neurogenetics and Behavior, The Rockefeller University, 1230 York Avenue, Box 63, New York New York, 10021, USA.
Correspondence should be addressed to A Keller. e-mail: kellera@mail.rockefeller.edu
},
abstract={At present, no satisfactory theory exists to explain how a given
molecule results in the perception of a particular smell. One theory
is that olfactory sensory neurons detect intramolecular vibrations of
the odorous molecule. We used psychophysical methods in humans to
test this vibration theory of olfaction and found no evidence to
support it.},
journal={Nature Neuroscience},
note={published online 21 March 2004, doi:10.1038/nn1215 }
}
@inproceedings{grassl:qc2002a,
author = {M. Grassl and A. Klappenecker and M. R\"otteler},
title = "Graphs, Quadratic Forms and Quantum Codes",
booktitle = "Proc. IEEE Int. Symp. Inf. Th. 2002",
publisher = "IEEE Inf. Th. Soc.",
year = 2002
}
@article{schlingemann:qc2001a,
author = "Schlingemann, D. and Werner, R. F. ",
title = "Quantum Error-Correcting Codes Associated with Graphs",
year = 2002,
journal = pra,
volume = 65,
pages = "012308/1--8",
web = "http://arxiv.org/abs/quant-ph/0012111",
xxxep = "quant-ph/0012111",
address = "{\tt d.schlingemann@tu-bs.de}"
}
@article{schlingemann:qc2001b,
author = "Schlingemann, D. and Werner, R. F. ",
title = "Stabilizer Codes Can Be Realized as Graph Codes",
journal = qic,
volume = 2,
pages = "307-323",
year = 2002,
web = "http://arxiv.org/abs/quant-ph/0111080",
xxxep = "quant-ph/0111080",
address = "{\tt d.schlingemann@tu-bs.de}"
}
@article{Jarzynski97,
author = "Jarzynski, C",
title = "Nonequilibrium equality for free energy differences",
journal = "Phys.\ Rev.\ Lett.",
year = "1997",
volume = "78",
number = "14",
pages = "2690-2693",
BIDS-type = "journal",
abstract = "An expression is derived for the equilibrium free energy
difference between two configurations of a system, in terms of
an ensemble of finite-time measurements of the work performed
in parametrically switching from one configuration to the
other. Two well-known identities emerge as limiting cases of
this result.",
copy = {StatMech},
annote={PS says:
You were right about the Jarzynski result being essentially just AIS.
The generalized version of his expression for the free energy, which
relates the distributions of the work during the forward and backward
processes, also has an analog in AIS when "run backwards".
}
}
@article{ClaCueSeaSolSpe00,
author = "Clarke, N and Cuesta, J A and Sear, R and Sollich, P and
Speranza, A",
title = "Phase equilibria in the polydisperse {Zwanzig} model of hard
rods",
journal = "J.\ Chem.\ Phys.",
year = "2000",
volume = "113",
number = "14",
pages = "5817-5829",
annote={
On the Zwanzig model, the original ref is in here
}
}
@article{Flory56b,
author = "Flory, P J",
title = "Phase equilibria in solutions of rod-like particles",
journal = "Proc. R. Soc. London A",
year = "1956",
volume = "234",
pages = "73-89",
copy = {Poly:Rods}
}
@article{FloAbe78,
author = "Flory, P J and Abe, A",
title = "Statistical Thermodynamics of Mixtures of Rodlike
Particles. 1. {T}heory for Polydisperse Systems",
journal = macromol,
year = "1978",
volume = "11",
pages = "1119-1122",
copy = {Poly:Rods}
}